Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin.
Identifieur interne : 000A46 ( Main/Exploration ); précédent : 000A45; suivant : 000A47Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin.
Auteurs : Jun Cui [République populaire de Chine] ; Yushi Luan [République populaire de Chine] ; Ning Jiang [République populaire de Chine] ; Hang Bao [République populaire de Chine] ; Jun Meng [République populaire de Chine]Source :
- The Plant journal : for cell and molecular biology [ 1365-313X ] ; 2017.
Descripteurs français
- KwdFr :
- ARN long non codant (génétique), Espèces réactives de l'oxygène (métabolisme), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Feuilles de plante (métabolisme), Glutarédoxines (génétique), Interactions hôte-pathogène (MeSH), Lycopersicon esculentum (classification), Lycopersicon esculentum (génétique), Lycopersicon esculentum (microbiologie), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Phytophthora infestans (physiologie), Protéines végétales (classification), Protéines végétales (génétique), Régulation de l'expression des gènes végétaux (MeSH), Réseaux de régulation génique (MeSH), Résistance à la maladie (génétique), Similitude de séquences d'acides aminés (MeSH), Spécificité d'espèce (MeSH), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH), Transcriptome (MeSH).
- MESH :
- génétique : ARN long non codant, Feuilles de plante, Glutarédoxines, Lycopersicon esculentum, Maladies des plantes, Protéines végétales, Résistance à la maladie.
- microbiologie : Feuilles de plante, Lycopersicon esculentum, Maladies des plantes.
- métabolisme : Espèces réactives de l'oxygène, Feuilles de plante.
- physiologie : Phytophthora infestans.
- classification : Interactions hôte-pathogène, Phylogenèse, Protéines végétales, Régulation de l'expression des gènes végétaux, Réseaux de régulation génique, Similitude de séquences d'acides aminés, Spécificité d'espèce, Séquence d'acides aminés, Séquence nucléotidique, Transcriptome.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Base Sequence (MeSH), Disease Resistance (genetics), Gene Expression Regulation, Plant (MeSH), Gene Regulatory Networks (MeSH), Glutaredoxins (genetics), Host-Pathogen Interactions (MeSH), Lycopersicon esculentum (classification), Lycopersicon esculentum (genetics), Lycopersicon esculentum (microbiology), Phylogeny (MeSH), Phytophthora infestans (physiology), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (metabolism), Plant Leaves (microbiology), Plant Proteins (classification), Plant Proteins (genetics), RNA, Long Noncoding (genetics), Reactive Oxygen Species (metabolism), Sequence Homology, Amino Acid (MeSH), Species Specificity (MeSH), Transcriptome (MeSH).
- MESH :
- chemical , classification : Plant Proteins.
- chemical , genetics : Glutaredoxins, Plant Proteins, RNA, Long Noncoding.
- classification : Lycopersicon esculentum.
- genetics : Disease Resistance, Lycopersicon esculentum, Plant Diseases, Plant Leaves.
- metabolism : Plant Leaves, Reactive Oxygen Species.
- microbiology : Lycopersicon esculentum, Plant Diseases, Plant Leaves.
- physiology : Phytophthora infestans.
- Amino Acid Sequence, Base Sequence, Gene Expression Regulation, Plant, Gene Regulatory Networks, Host-Pathogen Interactions, Phylogeny, Sequence Homology, Amino Acid, Species Specificity, Transcriptome.
Abstract
The rapid development of omics sequencing technology has facilitated the identification of thousands of long non-coding (lnc)RNAs in plant species, but the role of lncRNAs in plant-pathogen interactions remains largely unexplored. We used comparative transcriptome analysis of Phytophthora infestans-resistant and -susceptible tomatoes to identify differentially expressed genes (DEGs) and lncRNAs (DELs), and examine lncRNA-mRNA networks. A total of 1037 DEGs and 688 DELs were identified between P. infestans-resistant and -susceptible tomatoes. The co-localization networks, including 128 DEGs and 127 DELs, were performed. We found that lncRNA16397 acted as an antisense transcript of SlGRX22 to regulate its expression, and also induced SlGRX21 expression when lncRNA16397 was overexpressed. In addition, disease symptoms and reactive oxygen species (ROS) accumulation in tomatoes overexpressing lncRNA16397 and SpGRX were fewer and lower than those in wild-type after P. infestans infection. This result suggests that tomato lncRNA16397 induces SlGRX expression to reduce ROS accumulation and alleviate cell membrane injury, resulting in enhanced resistance to P. infestans. Our results provide insight into lncRNAs involved in the response of tomato to P. infestans infection, demonstrate that the lncRNA16397-GRXs network is an important component of the P. infestans network in tomato, and provide candidates for breeding to enhance biotic stress-resistance in tomato.
DOI: 10.1111/tpj.13408
PubMed: 27801966
Affiliations:
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(MeSH)</term><term>Lycopersicon esculentum (classification)</term><term>Lycopersicon esculentum (genetics)</term><term>Lycopersicon esculentum (microbiology)</term><term>Phylogeny (MeSH)</term><term>Phytophthora infestans (physiology)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (metabolism)</term><term>Plant Leaves (microbiology)</term><term>Plant Proteins (classification)</term><term>Plant Proteins (genetics)</term><term>RNA, Long Noncoding (genetics)</term><term>Reactive Oxygen Species (metabolism)</term><term>Sequence Homology, Amino Acid (MeSH)</term><term>Species Specificity (MeSH)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN long non codant (génétique)</term><term>Espèces réactives de l'oxygène (métabolisme)</term><term>Feuilles de plante (génétique)</term><term>Feuilles de plante (microbiologie)</term><term>Feuilles de plante (métabolisme)</term><term>Glutarédoxines (génétique)</term><term>Interactions hôte-pathogène (MeSH)</term><term>Lycopersicon esculentum (classification)</term><term>Lycopersicon esculentum (génétique)</term><term>Lycopersicon esculentum (microbiologie)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Phylogenèse (MeSH)</term><term>Phytophthora infestans (physiologie)</term><term>Protéines végétales (classification)</term><term>Protéines végétales (génétique)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Réseaux de régulation génique (MeSH)</term><term>Résistance à la maladie (génétique)</term><term>Similitude de séquences d'acides aminés (MeSH)</term><term>Spécificité d'espèce (MeSH)</term><term>Séquence d'acides aminés (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Transcriptome (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>Plant Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Glutaredoxins</term><term>Plant Proteins</term><term>RNA, Long Noncoding</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Lycopersicon esculentum</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Lycopersicon esculentum</term><term>Plant Diseases</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN long non codant</term><term>Feuilles de plante</term><term>Glutarédoxines</term><term>Lycopersicon esculentum</term><term>Maladies des plantes</term><term>Protéines végétales</term><term>Résistance à la maladie</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plant Leaves</term><term>Reactive Oxygen Species</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term><term>Lycopersicon esculentum</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Lycopersicon esculentum</term><term>Plant Diseases</term><term>Plant Leaves</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Espèces réactives de l'oxygène</term><term>Feuilles de plante</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Base Sequence</term><term>Gene Expression Regulation, Plant</term><term>Gene Regulatory Networks</term><term>Host-Pathogen Interactions</term><term>Phylogeny</term><term>Sequence Homology, Amino Acid</term><term>Species Specificity</term><term>Transcriptome</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Interactions hôte-pathogène</term><term>Phylogenèse</term><term>Protéines végétales</term><term>Régulation de l'expression des gènes végétaux</term><term>Réseaux de régulation génique</term><term>Similitude de séquences d'acides aminés</term><term>Spécificité d'espèce</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The rapid development of omics sequencing technology has facilitated the identification of thousands of long non-coding (lnc)RNAs in plant species, but the role of lncRNAs in plant-pathogen interactions remains largely unexplored. We used comparative transcriptome analysis of Phytophthora infestans-resistant and -susceptible tomatoes to identify differentially expressed genes (DEGs) and lncRNAs (DELs), and examine lncRNA-mRNA networks. A total of 1037 DEGs and 688 DELs were identified between P. infestans-resistant and -susceptible tomatoes. The co-localization networks, including 128 DEGs and 127 DELs, were performed. We found that lncRNA16397 acted as an antisense transcript of SlGRX22 to regulate its expression, and also induced SlGRX21 expression when lncRNA16397 was overexpressed. In addition, disease symptoms and reactive oxygen species (ROS) accumulation in tomatoes overexpressing lncRNA16397 and SpGRX were fewer and lower than those in wild-type after P. infestans infection. This result suggests that tomato lncRNA16397 induces SlGRX expression to reduce ROS accumulation and alleviate cell membrane injury, resulting in enhanced resistance to P. infestans. Our results provide insight into lncRNAs involved in the response of tomato to P. infestans infection, demonstrate that the lncRNA16397-GRXs network is an important component of the P. infestans network in tomato, and provide candidates for breeding to enhance biotic stress-resistance in tomato.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27801966</PMID><DateCompleted><Year>2017</Year><Month>11</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1365-313X</ISSN><JournalIssue CitedMedium="Internet"><Volume>89</Volume><Issue>3</Issue><PubDate><Year>2017</Year><Month>02</Month></PubDate></JournalIssue><Title>The Plant journal : for cell and molecular biology</Title><ISOAbbreviation>Plant J</ISOAbbreviation></Journal><ArticleTitle>Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin.</ArticleTitle><Pagination><MedlinePgn>577-589</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/tpj.13408</ELocationID><Abstract><AbstractText>The rapid development of omics sequencing technology has facilitated the identification of thousands of long non-coding (lnc)RNAs in plant species, but the role of lncRNAs in plant-pathogen interactions remains largely unexplored. We used comparative transcriptome analysis of Phytophthora infestans-resistant and -susceptible tomatoes to identify differentially expressed genes (DEGs) and lncRNAs (DELs), and examine lncRNA-mRNA networks. A total of 1037 DEGs and 688 DELs were identified between P. infestans-resistant and -susceptible tomatoes. The co-localization networks, including 128 DEGs and 127 DELs, were performed. We found that lncRNA16397 acted as an antisense transcript of SlGRX22 to regulate its expression, and also induced SlGRX21 expression when lncRNA16397 was overexpressed. In addition, disease symptoms and reactive oxygen species (ROS) accumulation in tomatoes overexpressing lncRNA16397 and SpGRX were fewer and lower than those in wild-type after P. infestans infection. This result suggests that tomato lncRNA16397 induces SlGRX expression to reduce ROS accumulation and alleviate cell membrane injury, resulting in enhanced resistance to P. infestans. Our results provide insight into lncRNAs involved in the response of tomato to P. infestans infection, demonstrate that the lncRNA16397-GRXs network is an important component of the P. infestans network in tomato, and provide candidates for breeding to enhance biotic stress-resistance in tomato.</AbstractText><CopyrightInformation>© 2016 The Authors The Plant Journal © 2016 John Wiley & Sons Ltd.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Cui</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Luan</LastName><ForeName>Yushi</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jiang</LastName><ForeName>Ning</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bao</LastName><ForeName>Hang</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>School of Life Science and Biotechnology, Dalian University of Technology, Dalian, 116024, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Meng</LastName><ForeName>Jun</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>School of Computer Science and Technology, Dalian University of Technology, Dalian, 116024, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>LC155905</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D003160">Comparative Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>02</Month><Day>03</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant J</MedlineTA><NlmUniqueID>9207397</NlmUniqueID><ISSNLinking>0960-7412</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D054477">Glutaredoxins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D062085">RNA, Long Noncoding</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D017382">Reactive Oxygen Species</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D053263" MajorTopicYN="N">Gene Regulatory Networks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D054477" MajorTopicYN="N">Glutaredoxins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D054884" MajorTopicYN="N">Host-Pathogen Interactions</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018551" MajorTopicYN="N">Lycopersicon esculentum</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D062085" MajorTopicYN="N">RNA, Long Noncoding</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017382" MajorTopicYN="N">Reactive Oxygen Species</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017386" MajorTopicYN="N">Sequence Homology, Amino Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="Y">Transcriptome</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Phytophthora infestans
</Keyword><Keyword MajorTopicYN="Y">co-expressing</Keyword><Keyword MajorTopicYN="Y">comparative transcriptome</Keyword><Keyword MajorTopicYN="Y">lncRNA</Keyword><Keyword MajorTopicYN="Y">tomato</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>07</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>09</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>11</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>11</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>11</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27801966</ArticleId><ArticleId IdType="doi">10.1111/tpj.13408</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Cui, Jun" sort="Cui, Jun" uniqKey="Cui J" first="Jun" last="Cui">Jun Cui</name></noRegion><name sortKey="Bao, Hang" sort="Bao, Hang" uniqKey="Bao H" first="Hang" last="Bao">Hang Bao</name><name sortKey="Jiang, Ning" sort="Jiang, Ning" uniqKey="Jiang N" first="Ning" last="Jiang">Ning Jiang</name><name sortKey="Luan, Yushi" sort="Luan, Yushi" uniqKey="Luan Y" first="Yushi" last="Luan">Yushi Luan</name><name sortKey="Meng, Jun" sort="Meng, Jun" uniqKey="Meng J" first="Jun" last="Meng">Jun Meng</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|texte= Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance to Phytophthora infestans by co-expressing glutaredoxin.
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